Publications

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Maximum likelihood estimates of pairwise rearrangement distances

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Enumerating Transformation Semigroups

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Computing Finite Semigroups

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On the atoms of algebraic lattices arising in $q$-theory

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Symmetries of Automata

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Symmetry structure in discrete models of biochemical systems: natural subsystems and the weak control hierarchy in a new model of computation driven by interactions

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Computational Understanding and Manipulation of Symmetries

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Group-theoretic models of the inversion process in bacterial genomes

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BIOMICS Project: Biological and Mathematical Basis of Interaction Computing

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Algebraic Analysis of the Computation in the Belousov-Zhabotinksy Reaction

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Symmetries of Automata (extended abstract)

Project

On the Skeleton of a Transformation Semigroup

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Transformation Semigroups as Constructive Dynamical Spaces

Automatic Analysis of Computation in BioChemical Reactions

Mirroring, Deixis, and Interaction Topology in the Emergence of Shared Vocabularies