1. The Game Is Not over Yet—Go in the Post-AlphaGo Era with A. Törmänen, Philosophies 2020, 5(4), 37, 15 pages, DOI, PDF
2. A Path-Deformation Framework for Determining Weighted Genome Rearrangement Distance with S. Bhatia, S. Serdoz, C.E. Praeger and V. Gebhardt, Frontiers in Genetics, Vol. 11, 24 September 2020, Article 1035, 9 pages, DOI, PDF
3. Derived metrics for the game of Go - intrinsic network strength assessment and cheat-detection with A. Törmänen, In: Proceedings of the 8th International Symposium on Computing and Networking (CANDAR), 2020, (will be published online by IEEEXplore), preprint
4. Bacterial phylogeny in the Cayley graph with C. Clark, A.R. Francis and V. Gebhardt, Discrete Mathematics, Algorithms and Applications Vol. 11, No. 05, 1950059, 2019, DOI, preprint
5. Computing Finite Semigroups with J. East, J.D. Mitchell and Y. Péresse, Journal of Symbolic Computation Volume 92, May–June 2019, Pages 110-155, DOI, preprint
6. The Algebraic View of Computation: Implementation, Interpretation and Time Phliosophies 2018, 3(2), 15, 14 pages, DOI, PDF
7. Enumerating Transformation Semigroups with J. East and J.D. Mitchell, Semigroup Forum 95, pages109–125(2017) , DOI, preprint
8. Maximum likelihood estimates of pairwise rearrangement distances with S. Serdoz, J. Sumner, B.R. Holland, P.D. Jarvis, M.M. Tanaka, and A.R. Francis, Journal for Theoretical Biology Volume 423, 21 June 2017, Pages 31-40 DOI, preprint
9. Finite Computational Structures and Implementations: Semigroups and Morphic Relations, International Journal of Networking and Computing, Volume 7, Number 2 , pages 318–335, July 2017, (extended version of the CANDAR 2016 paper), web, PDF
10. On the atoms of algebraic lattices arising in $q$-theory with M. Jackson, J. Rhodes and B. Steingerg, IJAC International Journal of Algebra and Computation Vol. 27, No. 2 (2017) 157–188 DOI, preprint
11. Finite Computational Structures and Implementations In: Proceedings of CANDAR’16, Fourth International Symposium on Computing and Networking, Hiroshima, Japan, November 22-25, 2016, pages 119-125; published online 2017 January 19. DOI, preprint
12. Symmetries of Automata with C.L. Nehaniv, Algebra and Discrete Mathematics, Volume 19 (2015), Number 1, pp. 48-57 web PDF
13. Symmetry structure in discrete models of biochemical systems: natural subsystems and the weak control hierarchy in a new model of computation driven by interactions with C.L. Nehaniv, J. Rhodes, P. Dini, E. R. Morris, G. Horváth, F. Karimi, D. Schreckling and M.J. Schilstra, Philosophical Transactions of the Royal Society A, Mathematical, Physical and Engineering Sciences, volume 373, issue 2046, 2015, DOI, PDF
14. Algebraic double cut and join - A group-theoretic approach to the operator on multichromosomal genomes with S. Bhatia and A.R. Francis, Journal of Mathematical Biology, November 2015, Volume 71, Issue 5, pp 1149–1178, DOI, preprint
15. Computational Understanding and Manipulation of Symmetries with C.L. Nehaniv, Artificial Life and Computational Intelligence, Volume 8955 of the series Lecture Notes in Computer Science pp 17-30 web, preprint
16. SgpDec: Cascade (De)Compositions of Finite Transformation Semigroups and Permutation Groups with J.D. Mitchell and C.L. Nehaniv, Lecture Notes in Computer Science vol. 8592, International Congress on Mathematical Software ICMS 2014: Mathematical Software, pp 75-82, web, preprint
17. Bacterial Genomics and Computational Group Theory: The BioGAP Package for GAP, with A.R. Francis and V. Gebhardt, Lecture Notes in Computer Science vol. 8592, International Congress on Mathematical Software ICMS 2014: Mathematical Software, pp 67-74 web
18. Group-theoretic models of the inversion process in bacterial genomes with V. Gebhardt, M.M. Tanaka and A.R. Francis, Journal of Mathematical Biology July 2014, Volume 69, Issue 1, pp 243–265 web, preprint
19. Exploring the concept of interaction computing through the discrete algebraic analysis of the Belousov–Zhabotinsky reaction with P. Dini, C.L. Nehaniv and M.J. Schilstra, Biosystems, Volume 112, Issue 2, Pages 145–162, 2013, web
20. BIOMICS Project: Biological and Mathematical Basis of Interaction Computing with P. Dini, C.L. Nehaniv, M.J. Schilstra, D. Schreckling, J. Posegga, G. Horváth and A.J. Munro, International Journal of Unconventional Computing, 8(4):283-287, 2012, web
21. Algebraic Analysis of the Computation in the Belousov-Zhabotinksy Reaction with P. Dini, C.L. Nehaniv, and M.J. Schilstra, IPCAT 2012 - 9th International Conference on Information Processing in Cells and Tissues, Lecture Notes in Computer Science, Vol. 7223. pp. 216-224, 2012, web
22. Book Review: Applications of Automata Theory and Algebra via the Mathematical Theory of Complexity to Biology, Physics, Psychology, Philosophy, and Games by John Rhodes, Artificial Life, Spring 2011, Vol. 17, No. 2 , Pages 141-143, web
23. How to Solve it? - The Tsumego Session Annales Mathematicae et Informaticae, 38 (2011) pp. 137–145, PDF
24. Symmetries of Automata (extended abstract) with C.L. Nehaniv, In P. Dömösi, I. Szabolcs (Eds.): Automata and Formal Languages, 13th International Conference, AFL 2011, Debrecen, Hungary, August 17-22, 2011, Proceedings, pp. 391, ISBN 978-615-5097-19-5
25. Algorithms for the Efficient Calculation of the Holonomy Decomposition (extended abstract) with J.D. Mitchell and C.L. Nehaniv, In P. Dömösi, I. Szabolcs (Eds.): Automata and Formal Languages, 13th International Conference, AFL 2011, Debrecen, Hungary, August 17-22, 2011, Proceedings, pp. 389-390, ISBN 978-615-5097-19-5
26. On Straight Words and Minimal Permutators in Finite Transformation Semigroups with C.L. Nehaniv, Implementation and Application of Automata, Volume 6482 of the series Lecture Notes in Computer Science pp 115-124, 2010, web, preprint
27. On the Skeleton of a Transformation Semigroup with C.L. Nehaniv, Annales Mathematicae et Informaticae Vol 37, 77-84, 2010, PDF
28. Transformation Semigroups as Constructive Dynamical Spaces with P. Dini, C.L. Nehaniv, M.J. Schilstra, In: Digital Ecosystems: Proceedings of the 3rd International Conference, OPAALS 2010, Editors : Colugnati, Fernando A B and Lopes, Lia C R and Barretto, Saulo F A, Springer LNICST, 245-265. DOI
29. Algebraic Properties of Automata Associated to Petri Nets and Applications to Computation in Intermediary Metabolism with C.L. Nehaniv, BioSystems 94(1-2):135-144, web
30. Automatic Analysis of Computation in BioChemical Reactions with C.L. Nehaniv, John L. Rhodes, and Maria Schilstra, BioSystems 94(1-2):126-134, web
31. Hierachical Coordinate Systems for Understanding Complexity and its Evolution with Applications to Genetic Regulatory Networks with C.L. Nehaniv, Artificial Life (Special Issue on Evolution of Complexity), 14(3):299-312, web
32. Finite residue class rings of integers modulo $n$ from the viewpoint of global semigroup theory with C.L. Nehaniv, In: Semigroups and Formal Languages (Proceedings of the International Conference in Honour of the 65th birthday of Donald B. McAlister), World Scientific Press, pp. 66-83, ISBN 9812707387, 2007, web
33. [HUN] Mesterséges élet és megértés In: Mesterséges intelligencia és határterületei - Interjú a kutatókkal, Aitia Internernational ZRt., Akadémiai Kiadó 2007. pp 45-50 [ISBN: 9789630582186]
34. Mirroring, Deixis, and Interaction Topology in the Emergence of Shared Vocabularies, with J. Baillie, C. L. Nehaniv, P. Quick, and S. Warren, New Frontiers in Artificial Intelligence Volume 3609 of the series Lecture Notes in Computer Science pp 325-334, 2007, web
35. Making Sense of the Sensory Data - Coordinate Systems by Hierarchical Decomposition with C.L. Nehaniv, Knowledge-Based Intelligent Information and Engineering Systems Volume 4253 of the series Lecture Notes in Computer Science pp 333-340, 2006, web
36. Cycle Structure in Automata and the Holonomy Decomposition with C.L. Nehaniv, Acta Cybernetica, Vol. 17, Num. 2, 199-211, [ISSN: 0324-721X], 2005, web PDF
37. [HUN] A spirálok szépségéről, In: Észleléstől a nyelvig, Gondolat Kiadó, pp 159-164 [ISBN: 9639500550] 2004.
38. Algebraic Hierarchical Decomposition of Finite State Automata: Comparison of Implementations for Krohn-Rhodes Theory with C.L. Nehaniv, Lecture Notes in Computer Science, Vol 3317, pp. 315-316, 2004, web
39. Evolvability of the Genotype-Phenotype Relation in Populations of Self-Replicating Digital Organisms in a Tierra-like System with C.L. Nehaniv, Advances in Artificial Life Volume 2801 of the series Lecture Notes in Computer Science pp 238-247, 2003, web
40. [HUN] Digitális evolúció VILÁGOSSÁG 2003 3-4 pp 53-62 PDF
41. [HUN] A lét értelmére vonatkozó kérdés ismételt felvetése - Túl misztikán és logikán, Kellék, 8-9, p135-148, 1997. PDF